Florida State University
Florida State University
Florida State University
 

Appendix

 

Wentian Li's Bioinformatics Course List (http://linkage.rockefeller.edu/wli/bioinfocourse/):

 

Africa:

University of Western Cape, South Africa, Winston Hide, South African National Bioinformatics Institute, Introduction to Bioinformatics.
 

Asia/Pacific:

Beijing University, Beijing, China, (supported by International Centre for Genetic Engineering and Biotechnology) Xiaocheng Gu, Jingchu Luo, Sandor Ponger, Molecular Biology Database and Analysis tools.
University of Melbourne, Australia, Macromolecular Structure and Bioinformatics.
National Tsing Hua University, Taiwan, J.K. Huang and P.C. Lyu, Bioinformatics and, as a separate course, Biodatabases.
Pune University, India, A.S. Kolaskar and R.R. Joshi, Advanced Diploma Courses in Bioinformatics.
Technion, Israel, Benny Chor, Algorithms for Computational Biology.
Tel Aviv University, Israel, Ron Shamir, Algorithms in Molecular Biology, and Racheli Kreisberg-Zakarin, Bioinformatics.
Weizmann Institute of Science, Israel, Introductory Computer Course for the Life Sciences;
Vered Chalifa-Caspi and Jaime Prilusky, Programming Course for Bioinformatics and Internet;
Jaime Prilusky and Marilyn Safran, Programming Course for Bioinformatics and Internet (II);
and Gustavo Glusman and Michael Rebhan, Bioinformatics and Computational Genomics.
 

Europe:

Associazione Italiana Logica ed Applicazioni (AILA), Italy (one time only), 11th International School for Computer Science Researchers: Computational Biology, June 20- July 3, 1999.
Universitat de Barcelona, Spain, Roderic Guigo, Estadistica i Informatica en Biologia Molecular.
University of Bergen, Norway, Department of Informatics, Soking og Maskinlaring and Anvendt Bioinformatikk.
European Molecular Biology Network - Italian Node, Consiglio Nazionale, delle Ricerche (CNR), Bari, Italy, David Judge, James Bonfield, (three-day course), Sequencing Project Management Using the Staden package.
European Molecular Biology Network - Swiss Node, Switzerland, (one-week course), Introduction to Sequence Analysis, Sept 2000
Free University, Berlin, Germany, Steffen Schulze-Kremer, Molekulare Bioinformatik.
University of Genenva, Switzerland, Amos Bairoch, et al, Programme de Cours a Option de Bioinfomatique.
Human Genome Mapping Project Resource Centre, United Kingdom, (2-3 days courses), Introductory biocomputing course;
Gene ID and Protein Analysis;
Sequencing Project Management; Protein Structure Prediction; and ACEDB Workshop.
Humboldt University, Berlin, Germany, H. Herzel and J. Schuchhardt, Introduction to Bioinformatics.
International Centre for Genetic Engineering and Biotechnology, Trieste, Italy,
Sandor Pongor, (one week course), Bioinformatics: Computer Methods in Molecular Biology.
Karolinkska Institute, Sweden, Niclas Jareborg, Bill Wilson, and Pia Jorgensen, (one week course), Biomedicin - Bioinformatics Course; Introduktion till Bioinformatik.
University of Leeds, United Kingdom, WWW Bioinformatics;
Bioinformatics Programming; Bioinformatics Software; and Bioinformatics Project.
University of Libre de Bruxelles, Belgium, plus 4 other universities (Facultes University Notre-Dame de la Paix, University de Liege, University Catholique de Louvain, and University de Mons-Hainaut), jointly organize a master program in bioinformatics course.
University de la Mediterannee, Marseille, France, Daniel Gauthret, Bioinformatique.
Oxford University, United Kingdom, Bioinformatics Centre, OUBC training courses.
Pasteur Institute, France, various courses on informatics in biology.
University of Skovde, Sweden, Bioinformatics Study Programme (4 years).
Stockholm University, Sweden, Arne Elofsson, Structural Biochemistry and Bioinformatics; and Bioinformatics.
Technical University of Denmark, Denmark, Steen Knudsen and Geeske deWitte Vestergaard, Introduction to Bioinformatics.
Uppsala University, Sweden, Mats Gustafsson, Helena Danielson, and Gerard Kleywegt, Molecular bioinformatics; Linnaeus Centre for Bioinformatics Bioinformatics; Basics of Bioinformatics; Distance Course in Bioinformatics; and EMBO Practical Course: from Genome Sequences to Protein Structures.
University of Valencia, Spain, Andres Moya Simarro and Fernando Gonzalez Candelas, Curso Nacional de Bioinformatica y Biocomputacion, Analisis de Secuencias de Acidos Nucleicos.
 

North America:

University of Arizona, USA, David Mount, Bioinformatics and Genomic Analysis.
BioPharmaceutical Technology Center Institute, Wisconsin, USA, Techniques in Bioinformatics and Comparative Genomics; and Database Design and Development for Genomics Research.
Boston University, USA, Zhiping Weng and Temple Smith, Protein and DNA Sequence Analysis; Biological Database Analysis. Joel Graber and Scott Mohr, Bioinformatic Applications. Maxim Frank-Kamenetskii, DNA Structure and Function.
University of British Columbia, Canada, Michael Murphy, Bioinformatics.
University of California Davis, USA, Dan Gusfield, Theory and Practice of Bioinformatics.
University of California San Diego, USA, Philip Bourne and Michael Gribskov, Using Internet Resources in Molecular Biology; Michael Gribskov and Doug Smith, Computer Analysis of Genome Information; Richard Beslow, Computational Biology.
University of California Santa Cruz, USA, David Haussler, Bioinformatics.
Canadian Bioinformatics Workshops, Canada, Francis Ouellette, David Baillie, Fiona Brinkman, Axel Ducret, Phil Hieter, Christopher Hogue, Walid Houry, Tom Hudson, Steven Jones, Francois Major, Marco Marra, Gabor Marth, Christoph Sensen, and David Wishart, Bioinformatics (two weeks), Proteomics (one week), Genomics (one week), Developing Tools (one week), NCBI toolkit (one week).
University of Carnegie-Mellon, USA, Robert Murphy, Introduction to Computational Biology, Introduction to Computational Molecular Biology, Computational Biology.
Cold Spring Harbor Laboratory, USA, Bill Pearson and Randall Smith¬ Computational Genomics (one week); Lincoln Stein and Steve Rozen, Genome informatics (two weeks); Watson School of Biological Sciences, Fudamentals of Bioinformatics.
Columbia University, USA, William Grundy, Computational Genomics; Richard Friedman (The Herbert Irving Comprehensive Cancer Center) Sequence Analysis; Andrey Rhezetsky, Medical Informatics and Introduction to Genomics.
University of Delaware, USA, Carl Schmidt, Bioinformatics.
George Mason University, USA, George Michaels and Jeff Solka, Multidimensional Genome Analysis.
Georgia Institute of Technology, USA, Masters of Science in Bioinformatics Program, Bioinformatics.
Harvard University, USA, Jun Liu and Wing-Hung Wong, Fundamentals of Computational Biology; George Church, Genomics and Computational Biology.
University of Illinois, USA, Shankar Subramaniam, Bioinformatics.
Indiana University/Purdue University Indianapolis, USA, Wei-Min Liu, Introduction to Bioinformatics.
Iowa State University, USA, Volker Brendel, Computational Molecular Biology.
Johns Hopkins University, USA, D. Landsman, A. Baxevanis, G. Bouffard, T.
Madden, H. Sicotte, and T. Wolfberg, Computing in Molecular Biology; Frank Lebeda and Mark Olson, Protein Bioinformatics; Steven Salzberg, Computational Biology.
University of Kentucky, USA, Bioinformatics.
University of Manitoba, Canada, Brian Fristensky, Topics in Genetics:
Bioinformatics.
Massachusetts Institute of Technology, USA, Bonnie Berger and Mona Singh, Introduction to Computational Molecular Biology.
University of Minnesota, USA, Lynda Ellis, Protein Sequence Analysis.
University of Missouri, USA, Su-Shing Chen, Bioinformatics:
Object-Oriented Biological Data Repositories.
National Center for Supercomputing Applications, USA, Introduction to Bioinformatics (three days).
University of Nebraska Lincoln, USA, David Jaffe, Algorithms in Biological Sequence Analysis; Ruben Donis, Computer Aided Sequence Analysis Primer.
University of Nebraska Medical Center Omaha, USA, Chad Price, Bill Chaney, and Nora Chapman, Introduction to Computerized Genetic Sequence Analysis.
University of New Mexico, USA, Sorin Istrail, Introduction to Computational Biology.
New Mexico State University, USA, Peter Lammers and Craig Liddell, Bioinformatics and Genome Analysis.
New York University, USA, Stuart Brown, Using Computers in Molecular Biology; Jerry Percus Mathematics of Genome Analysis; Bud Mishra, Computational Genomics.
North Carolina State University, USA, S.V. Muse, R.A. Dwyer, J. Hein, and J.L. Thorne, Bioinformatics (three day).
University of Pennsylvania, USA, Warren Ewens, Computational Biology, and Advanced Computational Biology.
Pittsburgh Supercomputing Center, USA, Nucleic Acid and Protein Sequence Analysis (one week).
Purdue University, USA, A. Apostolico, Topics in Bio-Informatics.
Queen's University, Canada, Donald Forsdyke and Janice Glasgow, Bioinformatics.
Rensselaer Polytechnic Institute, USA, Bioinformatics I and II and Drug Discovery.
Rutgers University, USA, Computational Molecular Biology and Structural Biology.
University of Southern California, USA, Richard Deonier, Simon Tavare, and Michael Waterman, Computational Genome Analysis.
Stanford University, USA, Russ Altman and John Cozza, Representations and Algorithms for Computational Molecular Biology; Michael Levitt, Computational Structural Biology; Douglas Brutlag, Genomics and Bioinformatics, and Computational Molecular Biology.
University of Virginia, USA, Bill Pearson, Computer Analysis of DNA and Protein Sequences.
University of Washington, USA, Martin Tompa, Computational Biology; Peter Karp, Larry Ruzzo, Martin Tompa, Reading and Research in Computational Biology.
Washington Univ at St. Louis, USA, Sean Eddy, Warren Gish, David States, and Michael Zuker, Computational Molecular Biology.
University of Waterloo, Canada, Jonathan Badger and Paul Kearn, Computational Biology.
University of Wisconsin, USA, Mark Craven, Bioinformatics; Ann Palmenberg, Sequence Analysis.
Yale University, USA, Mark Gerstein, Genomics and Bioinformatics.
 

South America:

Centro de Ingenieria Geneticay Biotecnologia, Cuba, Introduction to Bioinformatic (one week).
 

Virtual (Online Courses):

University of Bielefeld, Germany, Virtual School of Natural Sciences, Biocomputing on the Internet.
Birkbeck College, University of London, United Kingdom, Principles of Protein Structure, Using the Internet.
Burnham Institute, USA, Greg Quinn, Basic GCG/Sequence Alignment/Local DB Searching.
International Centre for Genetic Engineering and Biotechnology, Trieste, Italy, Sandor Pongor and Kristian Vlahovicek, Distant Homologies: Motifs, Patterns, Profiles.
University of Manchester, United Kingdom, Biocomputing and Bioinformatics.
National Hospital University of Oslo, Norway, Andrew Louka, A Guide to Molecular Sequence Analysis.
University of Nottingham, United Kingdom, Virtual School of Molecular Sciences.
Oxford University, United Kingdom, UNIX, GCG, SEQLAB and STADEN Tutorials.
Universite de Paris, France, Christian Fondrat, Cours de Bioinformatique.
Universite de Rouen, France, Christian Charras and Thierry Lecroq, Sequence Comparison.
 

The International Society for Computational Biology's (http://iscb.org/univ.html) list of computational biology and bioinformatics degree granting programs:

 

Africa:

South African National Bioinformatics Institute.
 

Australia:

University of Sydney, Bachelor of Science in Bioinformatics.
 

Europe:

Denmark -

Technical University of Denmark, Center for Biological Sequence Analysis.
 

Finland -

Helsinki University, Graduate School in Computational Biology, Bioinformatics, and Biometry.
 

Germany -

University of Bielefeld, Naturwissenschaftliche Informatik; University of Tuebingen, Bioinformatics.
 

Norway -

University of Bergen, Bioinformatics at the Department of Informatics.
 

Sweden -

Stockholm University, Theoretical DNA and Protein Analysis.
 

United Kingdom -

Birkbeck College, Master of Science in Molecular Modelling and Bioinformatics;
University of Exeter, Master of Science and Diploma/Certificate in Bioinformatics;
University of Edinburgh, Master of Science in Quantitative Genetics and Genome Analysis;
University of Leeds, Master of Research in Bioinformatics;
University of Liverpool, M. Sc. in Biosystems and Informatics;
University of Nottingham, Master of Philosophy in Molecular Biology with Bioinformatics;
University of Manchester, Master of Science in Bioinformatics;
University of York, Master of Research in Bioinformatics.
 

North America:

 

Canada -

Ontario:

Queen's University, Molecular Sequence Analysis Project;
Waterloo University, Undergraduate Degree in Bioinformatics and GraduateProgram in Bioinformatics;
 

Quebec:

University of Montreal, Biologie informatique et thorique
 

United States -

 

California:

Keck Graduate Institute, Professional Masters in Applied Biosciences;
Stanford University, Bioinformatics Program;
Stanford University, Medical Informatics Program;
University of California Irvine, Biomedical Informatics program;
University of California Los Angeles, Bioinformatics;
University of California Santa Cruz, Computational Biology Program;
University of California San Francisco, Program in Medical Information Sciences;
University of Southern California, Center for Computational and Experimental Genomics.
 

Georgia:

Georgia Tech University, Bioinformatics program.
 

Maryland:

 
Johns Hopkins University, Computational Biology.
 

Massachusetts:

Boston University, Bioinformatics Program; Harvard University, Computational Biology Program (part of Biophysics);
Massachusetts Institute of Technology, Department of Biology, Whitehead Center for Genome Research and Institute for Biomedical Research, MIT/Harvard Health Sciences Technology Program.
 

Minnesota:

University of Minnesota, Computational Biology Centers.
 

Missouri:

Washington University in St. Louis, Computational Molecular Biology Program.
 

Pennsylvania:

Keck Center for Advanced Training in Computational Biology, (affiliated with Carnegie Mellon University, the University of Pittsburgh, and the Pittsburgh Supercomputing Center);
Carnegie Mellon University, Undergraduate Computational Biology Program; University of Pennsylvania, Center for Bioinformatics.
 

Texas:

Rice University, W.M. Keck Center for Computational Biology.
 

Virginia:

George Mason, Bioinformatics and Computational Biology Ph.D. Program.
 

Washington:

University of Washington, Graduate Program in Computational Molecular Biology at the Fred Hutchinson Cancer Research Center;
University of Washington, Department of Molecular Biotechnology.
 

Wisconsin:

University of Wisconsin, Biotechnology Center.
 
Florida State University